Pseudomonas aeruginosa PAO1, PA5213 (gcvP1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Rho-independent transcription terminator TERM 1435 | 5871164 | 5871195 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 1436 | 5871171 | 5871188 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AmrZ binding site | 5869310 | 5869322 | + |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| AmrZ binding site | 5868744 | 5868756 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| VqsM binding site | 5869671 | 5869685 | + |
ECO:0000314
direct assay evidence used in manual assertion |
8051019 | Details |
| Inverted repeat: GACCTCGCCTCCG-N2-CGGAGGCGAGGTC | 5868155 | 5868182 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CCGGCTGGTA-N16-TACCAGCCGG | 5870700 | 5870735 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GACCTCGCCTCCG-N2-CGGAGGCGAGGTC | 5868155 | 5868182 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 5867805 | 5867809 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |