Pseudomonas syringae pv. syringae B728a, Psyr_3858

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005337 nucleoside transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01277
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.230.20
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature IPR003055 Nucleoside-specific channel-forming protein Tsx 295 318 2.4E-60
PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature IPR003055 Nucleoside-specific channel-forming protein Tsx 214 237 2.4E-60
PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature IPR003055 Nucleoside-specific channel-forming protein Tsx 182 207 2.4E-60
PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature IPR003055 Nucleoside-specific channel-forming protein Tsx 121 142 2.4E-60
PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature IPR003055 Nucleoside-specific channel-forming protein Tsx 147 167 2.4E-60
PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature IPR003055 Nucleoside-specific channel-forming protein Tsx 265 284 2.4E-60
Gene3D G3DSA:2.40.230.20 - IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily 55 319 6.6E-91
Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx IPR018013 Nucleoside-specific channel-forming protein, Tsx-like 64 319 1.5E-67
PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature IPR003055 Nucleoside-specific channel-forming protein Tsx 59 81 2.4E-60
PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature IPR003055 Nucleoside-specific channel-forming protein Tsx 86 110 2.4E-60
SUPERFAMILY SSF111364 Tsx-like channel IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily 63 319 1.05E-76

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.