Pseudomonas syringae pv. tomato DC3000, PSPTO_0536

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00267 duf1_3 IPR000160 GGDEF domain 378 550 4.3E-71
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 253 383 3.5E-12
Pfam PF13426 PAS domain IPR000014 PAS domain 29 130 3.9E-9
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 268 385 4.0E-19
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 11 129 1.57E-20
SMART SM00052 duf2_2 IPR001633 EAL domain 560 806 9.6E-119
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 248 811 0.0
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 389 546 7.5E-51
Pfam PF13426 PAS domain IPR000014 PAS domain 275 376 9.8E-14
Coils Coil Coil - - 547 574 -
CDD cd00130 PAS IPR000014 PAS domain 29 128 6.93045E-11
SMART SM00091 pas_2 IPR000014 PAS domain 143 210 4.9E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 259 387 4.8E-36
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 141 263 1.1E-14
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 377 825 0.0
CDD cd00130 PAS IPR000014 PAS domain 273 375 8.97664E-12
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 384 551 2.4E-41
Pfam PF00563 EAL domain IPR001633 EAL domain 566 801 4.3E-77
SMART SM00091 pas_2 IPR000014 PAS domain 19 89 3.0E-6
PIRSF PIRSF005925 Dos IPR012226 Diguanylate cyclase/phosphodiesterase 10 184 0.31
CDD cd01949 GGDEF IPR000160 GGDEF domain 390 547 2.89483E-65
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 561 815 1.8E-95
SMART SM00086 pac_2 IPR001610 PAC motif 336 378 5.6E-6
SMART SM00086 pac_2 IPR001610 PAC motif 216 256 21.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 128 254 7.68E-23
SMART SM00086 pac_2 IPR001610 PAC motif 91 131 0.015
Gene3D G3DSA:3.30.450.20 PAS domain - - 130 254 2.4E-21
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 17 138 1.2E-17
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 564 822 2.5E-103
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 385 548 3.3E-41
SMART SM00091 pas_2 IPR000014 PAS domain 264 330 5.0E-8
Pfam PF13426 PAS domain IPR000014 PAS domain 153 255 1.9E-6
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 565 810 3.27E-90
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 394 551 6.12E-51
CDD cd00130 PAS IPR000014 PAS domain 152 253 9.44379E-7
Gene3D G3DSA:3.30.450.20 PAS domain - - 9 129 2.4E-22
CDD cd01948 EAL IPR001633 EAL domain 566 806 4.88318E-116
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 269 376 3.14E-27
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 388 563 1.1E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.