Pseudomonas syringae pv. tomato DC3000, PSPTO_2853

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2853
NCBI Old Locus Tag	PSPTO2853
Name	Synonym: PSPTO2853
Replicon	chromosome
Genomic location	3204648 - 3207002 (+ strand)

Cross-References

RefSeq	NP_792655.1
GI	28870036
Entrez	1184507
INSDC	AAO56350.1
NCBI Locus Tag	PSPTO_2853
NCBI Old Locus Tag	PSPTO2853
UniParc	UPI0000008D31
UniProtKB Acc	Q881N5
UniProtKB ID	Q881N5_PSESM
UniRef100	UniRef100_Q881N5
UniRef50	UniRef50_Q9I683
UniRef90	UniRef90_Q881N5

Product

Feature Type	CDS
Coding Frame	1
Product Name	TonB-dependent receptor
Synonyms
Evidence for Translation
Charge (pH 7)	-4.67
Kyte-Doolittle Hydrophobicity Value	-0.411
Molecular Weight (kDa)	86.5
Isoelectric Point (pI)	6.41

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 262 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000425 (406 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2853 Search term: TonB-dependent receptor

Human Homologs

References