Pseudomonas protegens CHA0, PFLCHA0_c21340 (rtcB1)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006396	RNA processing	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01139	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008452	RNA ligase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01139	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pprc01501	beta-Lactam resistance	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF01139	tRNA-splicing ligase RtcB	IPR001233	RNA-splicing ligase, RtcB	125	372	9.8E-56
SUPERFAMILY	SSF103365	Hypothetical protein PH1602	IPR036025	tRNA-splicing ligase RtcB-like superfamily	4	372	1.57E-105
Coils	Coil	Coil	-	-	79	99	-
Pfam	PF01139	tRNA-splicing ligase RtcB	IPR001233	RNA-splicing ligase, RtcB	29	100	1.6E-12
Gene3D	G3DSA:3.90.1860.10	-	IPR036025	tRNA-splicing ligase RtcB-like superfamily	10	372	5.7E-94
NCBIfam	TIGR03073	JCVI: RNA ligase RtcB family protein, release factor H-associated	IPR017510	Release factor H-coupled RctB family protein	12	367	0.0
PANTHER	PTHR11118	UNCHARACTERIZED	IPR001233	RNA-splicing ligase, RtcB	21	98	2.0E-75

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.