Pseudomonas fluorescens Pf0-1, Pfl01_5643

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens Pf0-1
GCF_000012445.1|latest
Locus Tag
Pfl01_5643
Name
Replicon chromosome
Genomic location 6322625 - 6325594 (- strand)

Cross-References

RefSeq YP_351370.1
GI 77461863
Entrez 3717437
INSDC ABA77379.1
NCBI Locus Tag Pfl01_5643
UniParc UPI00005C7D1A
UniProtKB Acc Q3K4C5
UniProtKB ID Q3K4C5_PSEPF
UniRef100 UniRef100_Q3K4C5
UniRef50 UniRef50_Q4K3G4
UniRef90 UniRef90_A0A0B7DKL9

Product

Feature Type CDS
Coding Frame 1
Product Name
diguanylate cyclase/phosphodiesterase
Synonyms
Evidence for Translation
Charge (pH 7) 0.50
Kyte-Doolittle Hydrophobicity Value -0.074
Molecular Weight (kDa) 110792.2
Isoelectric Point (pI) 7.04

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004258 (1005 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Pfl01_5643

Human Homologs

Ensembl 97, assembly GRCh38.p12
phosphodiesterase 8B [Source:NCBI gene;Acc:8622]
E-value: 3.2e-06
Percent Identity: 28.2
Ensembl 97, assembly GRCh38.p12
phosphodiesterase 8B [Source:HGNC Symbol;Acc:HGNC:8794]
E-value: 3.2e-06
Percent Identity: 28.2
Ensembl 97, assembly GRCh38.p12
phosphodiesterase 8B [Source:HGNC Symbol;Acc:HGNC:8794]
E-value: 3.2e-06
Percent Identity: 28.2
Ensembl 97, assembly GRCh38.p12
phosphodiesterase 8B [Source:HGNC Symbol;Acc:HGNC:8794]
E-value: 3.2e-06
Percent Identity: 28.2

References

No references are associated with this feature.