Pseudomonas putida S16, PPS_2841

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas putida S16
GCF_000219705.1|latest
Locus Tag
PPS_2841
Name
Replicon chromosome
Genomic location 3158956 - 3161541 (+ strand)

Cross-References

RefSeq YP_004702272.1
GI 339487744
Entrez 10938475
INSDC AEJ13392.1
NCBI Locus Tag PPS_2841
UniParc UPI000217409C
UniProtKB Acc F8FXM8
UniProtKB ID F8FXM8_PSEP6
UniRef100 UniRef100_F8FXM8
UniRef50 UniRef50_D7HTI3
UniRef90 UniRef90_I7C5A5

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion ATPase
Synonyms
Evidence for Translation
Charge (pH 7) -12.79
Kyte-Doolittle Hydrophobicity Value -0.186
Molecular Weight (kDa) 94395.9
Isoelectric Point (pI) 5.99

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 597 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000089 (1199 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPS_2841

Human Homologs

Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 3.0e-37
Percent Identity: 33.5
Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 3.0e-37
Percent Identity: 33.5
Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 3.0e-37
Percent Identity: 33.5
Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 3.0e-37
Percent Identity: 33.5
Ensembl 97, assembly GRCh38.p12
ClpB homolog, mitochondrial AAA ATPase chaperonin [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 3.0e-37
Percent Identity: 33.5

References

No references are associated with this feature.