Pseudomonas putida S16, PPS_4679
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida S16
GCF_000219705.1|latest |
| Locus Tag |
PPS_4679
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 5293119 - 5294069 (+ strand) |
Cross-References
| RefSeq | YP_004704090.1 |
| GI | 339489562 |
| Entrez | 10940293 |
| NCBI Locus Tag | PPS_4679 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
IS111A/IS1328/IS1533, transposase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 12.60 |
| Kyte-Doolittle Hydrophobicity Value | -0.280 |
| Molecular Weight (kDa) | 35.4 |
| Isoelectric Point (pI) | 9.99 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 144 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG014192 (94 members) |
| Putative Inparalogs |
5 predicted inparalogs IS111A/IS1328/IS1533, transposase (PPS_3099) 100.0% identity IS111A/IS1328/IS1533/IS116/IS110/IS902, transposase (PPS_3170) 100.0% identity IS111A/IS1328/IS1533, transposase (PPS_3169) 100.0% identity IS111A/IS1328/IS1533, transposase (PPS_0133) 100.0% identity IS111A/IS1328/IS1533, transposase (PPS_1122) 100.0% identity |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPS_4679
Search term: IS111A/IS1328/IS1533, transposase
|
Human Homologs
References
No references are associated with this feature.