Pseudomonas syringae pv. tomato DC3000, PSPTO_0474 (hopAS1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000
GCF_000007805.1|latest
Locus Tag
PSPTO_0474
NCBI Old Locus TagPSPTO0474
Name
hopAS1
Synonym: PSPTO0474
Replicon chromosome
Genomic location 521328 - 522167 (- strand)

Cross-References

RefSeq NP_790323.1
GI 28867704
Entrez 1182083
INSDC AAO54018.1
NCBI Locus Tag PSPTO_0474
NCBI Old Locus Tag PSPTO0474
UniParc UPI0000008454
UniProtKB Acc Q88AB8
UniProtKB ID Q88AB8_PSESM
UniRef100 UniRef100_Q88AB8
UniRef50 UniRef50_Q88AB8
UniRef90 UniRef90_Q88AB8

Product

Feature Type CDS
Coding Frame 1
Product Name
type III effector HopAS1
Synonyms
Evidence for Translation
Charge (pH 7) 4.93
Kyte-Doolittle Hydrophobicity Value -0.577
Molecular Weight (kDa) 30.1
Isoelectric Point (pI) 10.05

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Pathogenic
Found only in pathogenic strains
Hits to this gene were found in one genus

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG017269 (5 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_0474
Search term: hopAS1

Human Homologs

References

No references are associated with this feature.