Pseudomonas syringae pv. tomato DC3000, PSPTO_1164

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_1164
NCBI Old Locus TagPSPTO1164
Name
Synonym: PSPTO1164
Replicon chromosome
Genomic location 1277310 - 1277999 (+ strand)

Cross-References

RefSeq NP_790996.1
GI 28868377
Entrez 1182800
INSDC AAO54691.1
NCBI Locus Tag PSPTO_1164
NCBI Old Locus Tag PSPTO1164
UniParc UPI00000086DF
UniProtKB Acc Q887W8
UniProtKB ID Q887W8_PSESM
UniRef100 UniRef100_A0A038GGQ4
UniRef50 UniRef50_Q9XAX8
UniRef90 UniRef90_A0A038GGQ4

Product

Feature Type CDS
Coding Frame 1
Product Name
ompA family protein
Synonyms
Evidence for Translation
Charge (pH 7) 4.67
Kyte-Doolittle Hydrophobicity Value -0.313
Molecular Weight (kDa) 23.8
Isoelectric Point (pI) 9.51

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 416 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000802 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_1164

Human Homologs

References

No references are associated with this feature.