Pseudomonas syringae pv. tomato DC3000, PSPTO_4023

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4023
NCBI Old Locus TagPSPTO4023
Name
Synonym: PSPTO4023
Replicon chromosome
Genomic location 4533616 - 4534335 (+ strand)

Cross-References

RefSeq NP_793785.1
GI 28871166
Entrez 1185702
INSDC AAO57480.1
NCBI Locus Tag PSPTO_4023
NCBI Old Locus Tag PSPTO4023
UniParc UPI0000009175
UniProtKB Acc Q87XZ7
UniProtKB ID Q87XZ7_PSESM
UniRef100 UniRef100_Q87XZ7
UniRef50 UniRef50_Q9RPT0
UniRef90 UniRef90_S3MCH9

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -0.89
Kyte-Doolittle Hydrophobicity Value -0.044
Molecular Weight (kDa) 26.6
Isoelectric Point (pI) 6.68

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 244 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002240 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4023

Human Homologs

Ensembl 110, assembly GRCh38.p14
tRNA methyltransferase O [Source:HGNC Symbol;Acc:HGNC:30967]
E-value: 5.2e-31
Percent Identity: 46.9

References

No references are associated with this feature.