Pseudomonas protegens Pf-5, PFL_0062 (ctaD)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_0062
Name	ctaD
Replicon	chromosome
Genomic location	61002 - 62597 (+ strand)

Cross-References

RefSeq	YP_257214.1
GI	70733574
EC Number	1.9.3.1
Entrez	3480661
INSDC	AAY95479.1
NCBI Locus Tag	PFL_0062
UniParc	UPI000054CB9C
UniProtKB Acc	Q4KKL9
UniProtKB ID	Q4KKL9_PSEF5
UniRef100	UniRef100_Q4KKL9
UniRef50	UniRef50_T2MHZ6
UniRef90	UniRef90_G8PXA8

Product

Feature Type	CDS
Coding Frame	1
Product Name	cytochrome c oxidase subunit I
Synonyms
Evidence for Translation
Charge (pH 7)	-0.51
Kyte-Doolittle Hydrophobicity Value	0.768
Molecular Weight (kDa)	58.9
Isoelectric Point (pI)	6.94

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 429 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000104 (999 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_0062 Search term: ctaD Search term: cytochrome c oxidase subunit I

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000354499 mitochondrially encoded cytochrome c oxidase I [Source:HGNC Symbol;Acc:HGNC:7419] E-value: 6.6e-135 Percent Identity: 48.8

References