Pseudomonas protegens Pf-5, PFL_0106

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0106
Name
Replicon chromosome
Genomic location 108946 - 109347 (+ strand)

Cross-References

RefSeq YP_257258.1
GI 70733618
Entrez 3480705
INSDC AAY95523.1
NCBI Locus Tag PFL_0106
UniParc UPI000054CBC8
UniProtKB Acc Q4KKH5
UniProtKB ID Q4KKH5_PSEF5
UniRef100 UniRef100_Q4KKH5
UniRef50 UniRef50_D7HTR3
UniRef90 UniRef90_Q4KKH5

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -1.85
Kyte-Doolittle Hydrophobicity Value -0.260
Molecular Weight (kDa) 14884.7
Isoelectric Point (pI) 6.66

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 159 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001522 (1100 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0106

Human Homologs

Ensembl 110, assembly GRCh38.p14
centromere protein V [Source:HGNC Symbol;Acc:HGNC:29920]
E-value: 1.2e-05
Percent Identity: 30.3

References

No references are associated with this feature.