Pseudomonas protegens Pf-5, PFL_2830

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2830
Name
Replicon chromosome
Genomic location 3154463 - 3155155 (- strand)

Cross-References

RefSeq YP_259936.1
GI 70730197
EC Number 5.1.1.13
Entrez 3477999
INSDC AAY92102.1
NCBI Locus Tag PFL_2830
UniParc UPI000054D61B
UniProtKB Acc Q4KCU7
UniProtKB ID Q4KCU7_PSEF5
UniRef100 UniRef100_Q4KCU7
UniRef50 UniRef50_P03813
UniRef90 UniRef90_Q4KCU7

Product

Feature Type CDS
Coding Frame 1
Product Name
aspartate racemase
Synonyms
Evidence for Translation
Charge (pH 7) -5.44
Kyte-Doolittle Hydrophobicity Value 0.196
Molecular Weight (kDa) 24833.4
Isoelectric Point (pI) 5.58

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 222 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG020275 (94 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2830

Human Homologs

References

No references are associated with this feature.