Pseudomonas protegens Pf-5, PFL_4954 (ispG)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_4954
Name	ispG
Replicon	chromosome
Genomic location	5709002 - 5710111 (- strand)

Cross-References

RefSeq	YP_262034.1
GI	70732278
EC Number	1.17.7.1
Entrez	3479365
INSDC	AAY94183.1
NCBI Locus Tag	PFL_4954
UniParc	UPI000054DE3D
UniProtKB Acc	Q4K6U9
UniProtKB ID	ISPG_PSEF5
UniRef100	UniRef100_Q4K6U9
UniRef50	UniRef50_P72241
UniRef90	UniRef90_Q4K6U9

Product

Feature Type	CDS
Coding Frame	1
Product Name	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Synonyms
Evidence for Translation
Charge (pH 7)	-2.42
Kyte-Doolittle Hydrophobicity Value	-0.030
Molecular Weight (kDa)	39729.4
Isoelectric Point (pI)	6.42

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 515 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001863 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_4954 Search term: ispG Search term: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

Human Homologs

References