Pseudomonas protegens Pf-5, PFL_5785 (epd)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5785
Name
epd
Replicon chromosome
Genomic location 6590537 - 6591616 (- strand)

Cross-References

RefSeq YP_262843.1
GI 70733070
EC Number 1.2.1.72
Entrez 3480157
INSDC AAY94975.1
NCBI Locus Tag PFL_5785
UniParc UPI000054E154
UniProtKB Acc Q4K4J0
UniProtKB ID Q4K4J0_PSEF5
UniRef100 UniRef100_Q4K4J0
UniRef50 UniRef50_Q3ILL8
UniRef90 UniRef90_Q4K4J0

Product

Feature Type CDS
Coding Frame 1
Product Name
D-erythrose-4-phosphate dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -11.62
Kyte-Doolittle Hydrophobicity Value -0.108
Molecular Weight (kDa) 39.1
Isoelectric Point (pI) 5.09

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 607 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000535 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5785
Search term: epd

Human Homologs

Ensembl 110, assembly GRCh38.p14
glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
E-value: 3.7e-65
Percent Identity: 38.0
Ensembl 110, assembly GRCh38.p14
glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
E-value: 3.7e-65
Percent Identity: 38.0
Ensembl 110, assembly GRCh38.p14
glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
E-value: 3.7e-65
Percent Identity: 38.0

References

No references are associated with this feature.