Pseudomonas aeruginosa PAO1, PA2385 (pvdQ)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Rho-independent transcription terminator TERM 569 | 2638861 | 2638910 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| VqsM binding site | 2638586 | 2638600 | + |
ECO:0000314
direct assay evidence used in manual assertion |
25034696 | Details |
| Inverted repeat: CCTGGCTGACCA-N33-TGGTCAGCCAGG | 2637287 | 2637343 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CTCGGGCGCC-N85-GGCGCCCGAG | 2636046 | 2636150 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 2636344 | 2636348 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |