Pseudomonas aeruginosa PAO1, PA2385 (pvdQ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
Rho-independent transcription terminator TERM 569 2638861 2638910 - ECO:0000246
computational combinatorial evidence used in automatic assertion
17313685 Details

Motifs annotated in this feature

Name Start Stop Strand Evidence PMID
VqsM binding site 2638586 2638600 + ECO:0000314
direct assay evidence used in manual assertion
12207696 Details
Inverted repeat: CCTGGCTGACCA-N33-TGGTCAGCCAGG 2637287 2637343 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
Inverted repeat: CTCGGGCGCC-N85-GGCGCCCGAG 2636046 2636150 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Shine-Dalgarno sequence 2636344 2636348 - ECO:0000256
match to sequence model evidence used in automatic assertion
Details